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Report for Sequence Feature Glyma03g27195

Feature Type:gene_model
Chromosome:Gm03
Start:34774411
stop:34777926
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g27195
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G27360AT Annotation by Michelle Graham. TAIR10: squamosa promoter-like 11 | chr1:9502139-9503715 FORWARD LENGTH=393 SoyBaseE_val: 2.00E-34ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0048510GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of timing of transition from vegetative to reproductive phase SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF03110PFAM SBP domain JGI ISS
UniRef100_B9RD49UniRef Annotation by Michelle Graham. Most informative UniRef hit: Squamosa promoter-binding protein, putative n=1 Tax=Ricinus communis RepID=B9RD49_RICCO SoyBaseE_val: 6.00E-55ISS
UniRef100_UPI00023377B1UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023377B1 related cluster n=1 Tax=unknown RepID=UPI00023377B1 SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g27195
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g27195 not represented in the dataset
Glyma03g27195 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g27195
ParalogEvidenceComments
Glyma07g14641 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g27195 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g117600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g27195
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma03g27195
>Glyma03g27195.2   sequence type=transcript   gene model=Glyma03g27195   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTTGGAGAGAACAACATGTTCAGCCTTAACACCCACACAAAAGAGGAAAATGGAAACACTGGCGGTAACAGTAACAATAACAATATTGTTAATGTTTGGTATTCATCATGGGATGCTACTACTACAACTAATGCACCACACACCACCACGGCCGCGGAGGGCTACGCCGGCGGCGGTCACCGCCTCCATCACCACCAACTATACGGCGGCGAAGGGTGTCACGTGCAGGCGGACCCTCACCTCACGTGCTTGCATCTTGGTAAAAGACATTACTTTGAGGATGCTACTAACGGTGATGATGCTAACAATGTTACTTCTCTGGGGAACCGACACGTGTGCGGTGGTGGTGGTGCGGGTTTTGTTTTTGCGGGTAACGATAAGAGAGCGAGGGGGTATTATGGTGGAGGAGGAGGTGGGGCTGGCGGTGGTGGTGGTGGTGGGAAATCGGCGCCGTTTGCGATGGTTCCTCGATGTCAGGTAGAGGGGTGCCACGTGGCGCTTGTGAACGCGAAGGAGTACCACAGGAGGCACAGAGTTTGCGATAAGCATTCCAAGGCACCCAAAGCTGTGGTCTTAGGGTTGGAGCAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATGTGGTGTCAGAGTTTGATGACTCAAAGAGGAGTTGTAGGAGGAGATTGGCAGGTCATAACGAGCGAAGAAGAAAGAGCTCTCACCTTTCTGTTACTAGGAATTCTAGACAAGGTAAACACAATTAATATATTGGTCAATTAGTTCACATTCTCATCTAAATCTTAATTTCTAGAGCAGTTTGCAATCCATTCGACATTTGAATTGAAAAGAAGAAACATGAAGCTTTTTCTAGTCTTGTTAACATAATACGGTGCGTAAATTAGTACTTAGGAGATAAAAAAAAATACATAAATTATCACTATAG
Coding sequences of Glyma03g27195
>Glyma03g27195.1   sequence type=CDS   gene model=Glyma03g27195   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTTGGAGAGAACAACATGTTCAGCCTTAACACCCACACAAAAGAGGAAAATGGAAACACTGGCGGTAACAGTAACAATAACAATATTGTTAATGTTTGGTATTCATCATGGGATGCTACTACTACAACTAATGCACCACACACCACCACGGCCGCGGAGGGCTACGCCGGCGGCGGTCACCGCCTCCATCACCACCAACTATACGGCGGCGAAGGGTGTCACGTGCAGGCGGACCCTCACCTCACGTGCTTGCATCTTGGTAAAAGACATTACTTTGAGGATGCTACTAACGGTGATGATGCTAACAATGTTACTTCTCTGGGGAACCGACACGTGTGCGGTGGTGGTGGTGCGGGTTTTGTTTTTGCGGGTAACGATAAGAGAGCGAGGGGGTATTATGGTGGAGGAGGAGGTGGGGCTGGCGGTGGTGGTGGTGGTGGGAAATCGGCGCCGTTTGCGATGGTTCCTCGATGTCAGGTAGAGGGGTGCCACGTGGCGCTTGTGAACGCGAAGGAGTACCACAGGAGGCACAGAGTTTGCGATAAGCATTCCAAGGCACCCAAAGCTGTGGTCTTAGGGTTGGAGCAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATGTGGTGTCAGAGTTTGATGACTCAAAGAGGAGTTGTAGGAGGAGATTGGCAGGTCATAACGAGCGAAGAAGAAAGAGCTCTCACCTTTCTGTTACTAGGAATTCTAGACAAGGGTGTGCTCTCTCTCTTCTGTCATCTGGGAGTAGTAGTGAAAATTGGCTATCTCATCATGCGGATTTCTCCACAAGATGCAGTGCAGCATTGCGTGAATTGATAGCAGAAAACCGTGCTGCCCTAATCACTAGACAACAACAACTTGTTTATGATAGAGACTGGCCTCATGTTGTGCCCCACCATGATGCTGCAGTGGAAGAAGAAGAAGAAGACTTTGAAGACTTACAACAACAACAACAACCACCTGAGCCCAATTATTTTCCACAACAACATATGTTTCCACAGACATAA

>Glyma03g27195.2   sequence type=CDS   gene model=Glyma03g27195   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTTGGAGAGAACAACATGTTCAGCCTTAACACCCACACAAAAGAGGAAAATGGAAACACTGGCGGTAACAGTAACAATAACAATATTGTTAATGTTTGGTATTCATCATGGGATGCTACTACTACAACTAATGCACCACACACCACCACGGCCGCGGAGGGCTACGCCGGCGGCGGTCACCGCCTCCATCACCACCAACTATACGGCGGCGAAGGGTGTCACGTGCAGGCGGACCCTCACCTCACGTGCTTGCATCTTGGTAAAAGACATTACTTTGAGGATGCTACTAACGGTGATGATGCTAACAATGTTACTTCTCTGGGGAACCGACACGTGTGCGGTGGTGGTGGTGCGGGTTTTGTTTTTGCGGGTAACGATAAGAGAGCGAGGGGGTATTATGGTGGAGGAGGAGGTGGGGCTGGCGGTGGTGGTGGTGGTGGGAAATCGGCGCCGTTTGCGATGGTTCCTCGATGTCAGGTAGAGGGGTGCCACGTGGCGCTTGTGAACGCGAAGGAGTACCACAGGAGGCACAGAGTTTGCGATAAGCATTCCAAGGCACCCAAAGCTGTGGTCTTAGGGTTGGAGCAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATGTGGTGTCAGAGTTTGATGACTCAAAGAGGAGTTGTAGGAGGAGATTGGCAGGTCATAACGAGCGAAGAAGAAAGAGCTCTCACCTTTCTGTTACTAGGAATTCTAGACAAGGTAAACACAATTAA
Predicted protein sequences of Glyma03g27195
>Glyma03g27195.1   sequence type=predicted peptide   gene model=Glyma03g27195   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFGENNMFSLNTHTKEENGNTGGNSNNNNIVNVWYSSWDATTTTNAPHTTTAAEGYAGGGHRLHHHQLYGGEGCHVQADPHLTCLHLGKRHYFEDATNGDDANNVTSLGNRHVCGGGGAGFVFAGNDKRARGYYGGGGGGAGGGGGGGKSAPFAMVPRCQVEGCHVALVNAKEYHRRHRVCDKHSKAPKAVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHLSVTRNSRQGCALSLLSSGSSSENWLSHHADFSTRCSAALRELIAENRAALITRQQQLVYDRDWPHVVPHHDAAVEEEEEDFEDLQQQQQPPEPNYFPQQHMFPQT*

>Glyma03g27195.2   sequence type=predicted peptide   gene model=Glyma03g27195   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFGENNMFSLNTHTKEENGNTGGNSNNNNIVNVWYSSWDATTTTNAPHTTTAAEGYAGGGHRLHHHQLYGGEGCHVQADPHLTCLHLGKRHYFEDATNGDDANNVTSLGNRHVCGGGGAGFVFAGNDKRARGYYGGGGGGAGGGGGGGKSAPFAMVPRCQVEGCHVALVNAKEYHRRHRVCDKHSKAPKAVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHLSVTRNSRQGKHN*






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